What a build over agreement is, and who actually says no
A build over agreement is Thames Water's written permission to build within 3 metres of a public sewer, or within 1 metre of a public lateral drain. You get it from Thames Water, not from the council. It is a separate consent from planning permission, and here is the part most people get wrong: planning permission does not give you permission to build over a sewer.
Thames Water says exactly that on its own website. The assumption still runs the other way, all the way through the industry. People get planning, get building control, start work, and meet the third consent much later, usually through a solicitor.
A build over agreement is a contract with your water company, not a consent from your council. In London that company is Thames Water, the sewerage undertaker, meaning the company legally responsible for the public sewers in the region.
The trigger is distance. You need an agreement if you build within 3 metres of a public sewer, a pipe serving more than one property, or within 1 metre of a public lateral drain, the length of your own drain running beyond your boundary. Public means the water company owns the pipe, not you.
Thames Water puts the key point bluntly: "Planning permission does not grant you permission to build over a sewer or drain."
Building Control does have a role. Approved Document H4, part of the Building Regulations, requires a Full Plans application where you build within 3 metres of a mapped sewer. So the trigger does exist in the regulations, in black and white.
But Building Control cannot grant the agreement, because it does not own the pipe. Only Thames Water can say yes or no.
Two consents. Two bodies. Only one ever appears on a planning portal.